Mixture module

The mixture module contains a number of classes that manage ‘mixtures’. Mixtures combine multiple specimens and phases with each other. Mixtures are part of the project, which also holds a reference to the phases and specimens (and possible others as well) in the mixture.

The combination of phases and specimens is achieved using a kind of combination ‘matrix’, in which rows are phases and columns are specimens. In other words, each column gets a specimen asigned to it, and each slot in the matrix gets a phase asigned to it. This way it is possible to have the same phase for different specimens of your sample if that pĥase is believed to be ‘immune’ to the treatments, or to have different (or at least partially different) phases when it is believed to be affected by the treatment in some way.

For an explanation on how to create and link phases see the documentation on Phases module.

TODO: add example code on how to use mixtures, optimizers and refiners

Mixture

Optimizer

Refiner

RefineContext